Research workbench
Structure of the rat rkip variant DELTA143-146
Analyse Structure of the rat rkip variant DELTA143-146 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6ENT
- Type
- protein
- Length
- 176 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Phosphatidylethanolamine-binding protein 1
- UniProt
- P31044
- Ligands
- ZN, CL
- Pockets
- 2 · best druggability 0.38
Structure
x-ray diffraction · 1 distinct chain · 11% helix, 30% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Phosphatidylethanolamine-binding protein 1 | protein | 176 | 11% helix, 30% strand | P31044 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 75 | 0.38 | 0.77 | 16 | empty |
| 2 | 60 | 0.35 | 0.78 | 12 | empty |
Compared structures
- 6ENT · Structure of the rat RKIP variant delta143-146 · the same entry in another collection · chain A against A, TM-score 1.00
- P31044 · AlphaFold monomer V2.0 prediction for phosphatidylethanolamine- binding protein 1 (P31044) · a predicted model of the same protein · chain A against A, TM-score 0.95
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P31044
- Elsewhere: RCSB PDB 6ENT · PDBe 6ENT · UniProt P31044
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