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Crystal structure of dual specific TRM10 construct from thermococcus kodakaraensis.

Analyse Crystal structure of dual specific TRM10 construct from thermococcus… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6EMS
Type: protein
Length: 244 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: TRNA (GUANINE(9)-/ADENINE(9)-N1)-methyltransferase
EC: 2.1.1.218, 2.1.1.221
UniProt: Q5JD38
Pockets: 2 · best druggability 0.44

Structure

x-ray diffraction · 1 distinct chain · 36% helix, 21% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	TRNA (GUANINE(9)-/ADENINE(9)-N1)-methyltransferase (EC 2.1.1.218, 2.1.1.221)	protein	244	36% helix, 21% strand	Q5JD38

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	149	0.44	0.75	27	empty
2	58	0.27	0.73	12	empty

Compared structures

6EMS · Crystal Structure of dual specific Trm10 construct from Thermococcus kodakaraensis. · the same entry in another collection · chain A against A, TM-score 1.00
Q5JD38 · AlphaFold monomer V2.0 prediction for tRNA (GUANINE(9)-/ADENINE(9)-N1)-methyltransferase… · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q5JD38
Elsewhere: RCSB PDB 6EMS · PDBe 6EMS · UniProt Q5JD38

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