Research workbench
Yaxb from yersinia enterocolitica
Analyse Yaxb from yersinia enterocolitica in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6EK8
- Type
- protein
- Length
- 249 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Yaxb
- UniProt
- A1JM52
- Pockets
- 2 · best druggability 0.57
Structure
x-ray diffraction · 1 distinct chain · 84% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Yaxb | protein | 249 | 84% helix, 0% strand | A1JM52 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 94 | 0.57 | 0.86 | 21 | empty |
| 2 | 82 | 0.39 | 0.77 | 18 | empty |
Compared structures
- 6EK8 · YaxB from Yersinia enterocolitica · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A1JM52
- Elsewhere: RCSB PDB 6EK8 · PDBe 6EK8 · UniProt A1JM52
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