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Structure of a ripp maturase, skfb
Analyse Structure of a ripp maturase, skfb in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6EFN
- Type
- protein
- Length
- 383 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Sporulation killing factor maturation protein skfb
- EC
- 1.21.98.-
- UniProt
- O31423
- Ligands
- SAM, SF4, FES, MG
- Pockets
- 2 · best druggability 0.78
Structure
x-ray diffraction · 1 distinct chain · 39% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Sporulation killing factor maturation protein skfb (EC 1.21.98.-) | protein | 383 | 39% helix, 18% strand | O31423 |
Ligands and binding sites
- SAM · S-adenosylmethionine · ligand · chains A
- SF4 · Iron/sulfur cluster · ligand · chains A
- FES · Fe2/s2 (inorganic) cluster · ligand · chains A
- MG · Magnesium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1011 | 0.78 | 0.80 | 70 | SAM, SF4, FES |
| 2 | 89 | 0.41 | 0.78 | 17 | empty |
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O31423
- Elsewhere: RCSB PDB 6EFN · PDBe 6EFN · UniProt O31423
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