Research workbench
Small tetraheme cytochrome C from shewanella oneidensis
Analyse Small tetraheme cytochrome C from shewanella oneidensis in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6EE7
- Type
- protein
- Length
- 91 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Periplasmic tetraheme cytochrome C ccta
- UniProt
- Q8EDL6
- Ligands
- HEC, ZN
- Pockets
- 1 · best druggability 0.67
Structure
x-ray diffraction · 1 distinct chain · 44% helix, 2% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Periplasmic tetraheme cytochrome C ccta | protein | 91 | 44% helix, 2% strand | Q8EDL6 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 374 | 0.67 | 0.80 | 48 | HEC |
Modifications
Observed in the structure: 8 cofactor (heme c attachment).
Compared structures
- 6EE7 · Small tetraheme cytochrome c from Shewanella oneidensis · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8EDL6
- Elsewhere: RCSB PDB 6EE7 · PDBe 6EE7 · UniProt Q8EDL6
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