Research workbench
Ohra (organic hydroperoxide resistance protein) mutant (C61S) in the "open conformation" from chromobacterium violaceum
Analyse Ohra (organic hydroperoxide resistance protein) mutant (C61S) in the "open… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6ED0
- Type
- protein
- Length
- 292 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Organic hydroperoxide resistance protein
- UniProt
- Q7P1K4
- Ligands
- SO4
- Pockets
- 2 · best druggability 0.45
Structure
x-ray diffraction · 2 distinct chains · 32% helix, 30% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Organic hydroperoxide resistance protein | protein | 150 | 31% helix, 29% strand | Q7P1K4 |
| B | Organic hydroperoxide resistance protein | protein | 142 | 33% helix, 30% strand | Q7P1K4 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 137 | 0.45 | 0.77 | 19 | empty |
| 2 | 107 | 0.44 | 0.78 | 20 | empty |
Interfaces
1 interface between chains.
- A–B · 3901 Ų buried · 69 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 2 modified (oxidation).
Compared structures
- 6ED0 · OhrA (Organic Hydroperoxide Resistance protein) mutant (C61S) in the "open conformation"… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q7P1K4
- Elsewhere: RCSB PDB 6ED0 · PDBe 6ED0 · UniProt Q7P1K4
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