Research workbench
DHF38 filament
Analyse DHF38 filament in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6E9Y
- Type
- protein
- Length
- 3,405 residues
- Chains
- 15
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DHF38 filament
- Pockets
- 20 · best druggability 0.78
Structure
electron microscopy · 1 distinct chain · 91% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E, F, G, H, I, J, K, L, M, N, O | DHF38 filament | protein | 227 | 91% helix, 0% strand | — |
Pockets
20 pockets found on a 1 Å grid, 20 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1163 | 0.78 | 0.80 | 129 | empty |
| 2 | 1000 | 0.75 | 0.78 | 90 | empty |
| 3 | 1137 | 0.75 | 0.78 | 105 | empty |
| 4 | 1057 | 0.75 | 0.78 | 95 | empty |
| 5 | 1049 | 0.75 | 0.78 | 99 | empty |
Interfaces
35 interfaces between chains.
- A–J · 900 Ų buried · 16 hydrogen bonds · protein-protein
- F–I · 898 Ų buried · 16 hydrogen bonds · protein-protein
- K–O · 895 Ų buried · 16 hydrogen bonds · protein-protein
- A–C · 895 Ų buried · 16 hydrogen bonds · protein-protein
- B–F · 895 Ų buried · 16 hydrogen bonds · protein-protein
Compared structures
- 6E9Y · DHF38 filament · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6E9Y · PDBe 6E9Y
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