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Bacteroides ovatus mixed-linkage glucan utilization locus (mlgul) sgbp-a

Analyse Bacteroides ovatus mixed-linkage glucan utilization locus (mlgul) sgbp-a in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6E60
Type: protein
Length: 538 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Mixed-linkage glucan utilization locus (mlgul) sgbp-B
UniProt: A7LY27
Ligands: MG
Pockets: 6 · best druggability 0.65

Structure

x-ray diffraction · 1 distinct chain · 53% helix, 5% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Mixed-linkage glucan utilization locus (mlgul) sgbp-B	protein	538	53% helix, 5% strand	A7LY27

Ligands and binding sites

MG · Magnesium ion · metal · 2 copies · chains A
EDO · 1,2-ethanediol · additive · 4 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

6 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	56	0.65	0.94	23	empty
2	108	0.53	0.83	21	empty
3	89	0.38	0.76	16	empty
4	51	0.35	0.79	15	empty
5	84	0.34	0.75	20	EDO

Compared structures

6E60 · Bacteroides ovatus mixed-linkage glucan utilization locus (MLGUL) SGBP-A · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A7LY27
Elsewhere: RCSB PDB 6E60 · PDBe 6E60 · UniProt A7LY27

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