Research workbench
NMR structure for SP1 transcription factor duplex 5'-D(TGGGCGGGG)
Analyse NMR structure for SP1 transcription factor duplex 5'-D(TGGGCGGGG) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6DXM
- Type
- DNA
- Length
- 18 nucleotides
- Chains
- 2
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA (5'-D(*TP*GP*GP*GP*CP*GP*GP*GP*G)-3'); DNA (5'-D(*CP*CP*CP*CP*GP*CP*CP*CP*A)-3')
Structure
solution nmr · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DNA (5'-D(*TP*GP*GP*GP*CP*GP*GP*GP*G)-3') | dna | 9 | — | — |
| B | DNA (5'-D(*CP*CP*CP*CP*GP*CP*CP*CP*A)-3') | dna | 9 | — | — |
Interfaces
1 interface between chains.
- A–B · 454 Ų buried · 51 hydrogen bonds · nucleic-nucleic
Compared structures
- 6DXM · NMR structure for Sp1 transcription factor duplex 5'-d(TGGGCGGGG) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6DXM · PDBe 6DXM
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