Research workbench
Crystal structure of the viral otu domain protease from dera ghazi khan virus
Analyse Crystal structure of the viral otu domain protease from dera ghazi khan virus in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6DX2
- Type
- protein
- Length
- 312 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- RNA-dependent RNA polymerase
- UniProt
- A0A191KW82
- Pockets
- 5 · best druggability 0.75
Structure
x-ray diffraction · 1 distinct chain · 40% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | RNA-dependent RNA polymerase | protein | 156 | 40% helix, 24% strand | A0A191KW82 |
Pockets
5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 208 | 0.75 | 0.90 | 29 | empty |
| 2 | 121 | 0.49 | 0.80 | 32 | empty |
| 3 | 70 | 0.43 | 0.80 | 14 | empty |
| 4 | 65 | 0.41 | 0.80 | 13 | empty |
| 5 | 68 | 0.33 | 0.75 | 19 | empty |
Interfaces
1 interface between chains.
- A–B · 853 Ų buried · 5 hydrogen bonds · protein-protein
Compared structures
- 6DX2 · Crystal structure of the viral OTU domain protease from Dera Ghazi Khan virus · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A191KW82
- Elsewhere: RCSB PDB 6DX2 · PDBe 6DX2 · UniProt A0A191KW82
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.