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Structure of the monoclinic-1 (monocl-1) crystal form of human apolipoprotein C1

Analyse Structure of the monoclinic-1 (monocl-1) crystal form of human apolipoprotein C1 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6DVU
Type: protein
Length: 104 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Apolipoprotein C-I
UniProt: P02654
Pockets: 1 · best druggability 0.39

Structure

x-ray diffraction · 2 distinct chains · 94% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Apolipoprotein C-I	protein	51	92% helix, 0% strand	P02654
B	Apolipoprotein C-I	protein	53	96% helix, 0% strand	P02654

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	145	0.39	0.73	23	empty

Interfaces

1 interface between chains.

A–B · 627 Å² buried · 5 hydrogen bonds · protein-protein

Compared structures

6DVU · Structure of the Monoclinic-1 (Monocl-1) Crystal Form of Human Apolipoprotein C1 · the same entry in another collection · chain A against A, TM-score 1.00
P02654 · AlphaFold monomer V2.0 prediction for apolipoprotein C-I (P02654) · a predicted model of the same protein · chain A against A, TM-score 0.53

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P02654
Elsewhere: RCSB PDB 6DVU · PDBe 6DVU · UniProt P02654

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