Research workbench
Structure of the salmonella spi-1 type III secretion injectisome secretin invg (residues 176-end) in the open gate state
Analyse Structure of the salmonella spi-1 type III secretion injectisome secretin invg… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6DV6
- Type
- protein
- Length
- 5,370 residues
- Chains
- 15
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Protein invg
- UniProt
- P35672
- Pockets
- 20 · best druggability 0.80
Structure
electron microscopy · 1 distinct chain · 14% helix, 45% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E, F, G, H, I, J, K, L, M, N, O | Protein invg | protein | 358 | 14% helix, 45% strand | P35672 |
Pockets
20 pockets found on a 1 Å grid, 20 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 158 | 0.80 | 0.96 | 38 | empty |
| 2 | 159 | 0.80 | 0.96 | 32 | empty |
| 3 | 144 | 0.80 | 0.97 | 30 | empty |
| 4 | 158 | 0.79 | 0.96 | 34 | empty |
| 5 | 149 | 0.78 | 0.95 | 32 | empty |
Interfaces
40 interfaces between chains.
- J–K · 5369 Ų buried · 62 hydrogen bonds · protein-protein
- H–I · 5351 Ų buried · 69 hydrogen bonds · protein-protein
- E–F · 5335 Ų buried · 58 hydrogen bonds · protein-protein
- I–J · 5321 Ų buried · 57 hydrogen bonds · protein-protein
- N–O · 5316 Ų buried · 58 hydrogen bonds · protein-protein
Compared structures
- 6DV6 · Structure of the Salmonella SPI-1 type III secretion injectisome secretin InvG (residues… · the same entry in another collection · chain O against O, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P35672
- Elsewhere: RCSB PDB 6DV6 · PDBe 6DV6 · UniProt P35672
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.