Research workbench
Structure of the salmonella spi-1 type III secretion injectisome secretin invg in the open gate state
Analyse Structure of the salmonella spi-1 type III secretion injectisome secretin invg… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6DV3
- Type
- protein
- Length
- 7,500 residues
- Chains
- 15
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Protein invg
- UniProt
- P35672
- Pockets
- 20 · best druggability 0.82
Structure
electron microscopy · 1 distinct chain · 21% helix, 39% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E, F, G, H, I, J, K, L, M, N, O | Protein invg | protein | 500 | 21% helix, 39% strand | P35672 |
Pockets
20 pockets found on a 1 Å grid, 20 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 882 | 0.82 | 0.84 | 94 | empty |
| 2 | 149 | 0.79 | 0.96 | 30 | empty |
| 3 | 148 | 0.79 | 0.96 | 38 | empty |
| 4 | 156 | 0.79 | 0.95 | 38 | empty |
| 5 | 152 | 0.78 | 0.95 | 33 | empty |
Interfaces
40 interfaces between chains.
- J–K · 6762 Ų buried · 73 hydrogen bonds · protein-protein
- E–F · 6597 Ų buried · 66 hydrogen bonds · protein-protein
- K–L · 6581 Ų buried · 77 hydrogen bonds · protein-protein
- A–B · 6579 Ų buried · 61 hydrogen bonds · protein-protein
- I–J · 6562 Ų buried · 64 hydrogen bonds · protein-protein
Compared structures
- 6DV3 · Structure of the Salmonella SPI-1 type III secretion injectisome secretin InvG in the… · the same entry in another collection · chain O against O, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P35672
- Elsewhere: RCSB PDB 6DV3 · PDBe 6DV3 · UniProt P35672
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