Research workbench
Crystal structure of E. COLI lpoa amino terminal domain
Analyse Crystal structure of E. COLI lpoa amino terminal domain in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6DR3
- Type
- protein
- Length
- 223 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Penicillin-binding protein activator lpoa
- UniProt
- P45464
- Pockets
- 3 · best druggability 0.53
Structure
x-ray diffraction · 1 distinct chain · 70% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Penicillin-binding protein activator lpoa | protein | 223 | 70% helix, 0% strand | P45464 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 244 | 0.53 | 0.76 | 30 | empty |
| 2 | 114 | 0.43 | 0.78 | 21 | empty |
| 3 | 56 | 0.27 | 0.73 | 18 | empty |
Compared structures
- 6DR3 · Crystal structure of E. coli LpoA amino terminal domain · the same entry in another collection · chain A against A, TM-score 1.00
- P45464 · AlphaFold monomer V2.0 prediction for penicillin-binding protein activator lpoa (P45464) · a predicted model of the same protein · chain A against A, TM-score 0.87
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P45464
- Elsewhere: RCSB PDB 6DR3 · PDBe 6DR3 · UniProt P45464
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