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The crystal structure of a K49 PLA2 from the snake venom of agkistrodon acutus
Analyse The crystal structure of a K49 PLA2 from the snake venom of agkistrodon acutus in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1MG6
- Type
- protein
- Length
- 122 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Phospholipase A2
- EC
- 3.1.1.4
- UniProt
- O57385
- Pockets
- 1 · best druggability 0.49
Structure
x-ray diffraction · 1 distinct chain · 49% helix, 7% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Phospholipase A2 (EC 3.1.1.4) | protein | 122 | 49% helix, 7% strand | O57385 |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 144 | 0.49 | 0.78 | 21 | empty |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
- 1MG6 · The Crystal Structure of a K49 PLA2 from the Snake Venom of Agkistrodon acutus · the same entry in another collection · chain A against A, TM-score 1.00
- O57385 · AlphaFold monomer V2.0 prediction for basic phospholipase A2 homolog acutohaemolysin… · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O57385
- Elsewhere: RCSB PDB 1MG6 · PDBe 1MG6 · UniProt O57385
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