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Bacteroidetes AC2A susd-like

Analyse Bacteroidetes AC2A susd-like in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6DK2
Type: protein
Length: 1,031 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Susd
UniProt: A0A076ML24
Ligands: SO4, CL
Pockets: 13 · best druggability 0.71

Structure

x-ray diffraction · 2 distinct chains · 53% helix, 4% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Susd	protein	516	53% helix, 4% strand	A0A076ML24
B	Susd	protein	515	54% helix, 4% strand	A0A076ML24

Ligands and binding sites

SO4 · Sulfate ion · ion · 14 copies · chains A, B
CL · Chloride ion · ion · 2 copies · chains A, B
EDO · 1,2-ethanediol · additive · 28 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

13 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	610	0.71	0.79	58	EDO, CL
2	157	0.56	0.81	17	empty
3	174	0.54	0.79	20	empty
4	58	0.45	0.84	18	empty
5	89	0.43	0.80	26	empty

Interfaces

1 interface between chains.

A–B · 545 Å² buried · 3 hydrogen bonds · protein-protein

Compared structures

6DK2 · Bacteroidetes AC2a SusD-like · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A076ML24
Elsewhere: RCSB PDB 6DK2 · PDBe 6DK2 · UniProt A0A076ML24

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