Research workbench
Nfvfgt segment from human immunoglobulin light-chain variable domain, residues 98-103, assembled as an amyloid fibril
Analyse Nfvfgt segment from human immunoglobulin light-chain variable domain, residues… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6DIX
- Type
- protein
- Length
- 24 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Nfvfgt immunoglobulin light-chain variable domain
Structure
x-ray diffraction · 1 distinct chain · 0% helix, 67% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D | Nfvfgt immunoglobulin light-chain variable domain | protein | 6 | 0% helix, 67% strand | — |
Interfaces
5 interfaces between chains.
- A–D · 275 Ų buried · 9 hydrogen bonds · protein-protein
- A–B · 264 Ų buried · 11 hydrogen bonds · protein-protein
- C–D · 245 Ų buried · 5 hydrogen bonds · protein-protein
- A–C · 45 Ų buried · 0 hydrogen bonds · protein-protein
- B–D · 33 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 6DIX · NFVFGT segment from Human Immunoglobulin Light-Chain Variable Domain, Residues 98-103… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6DIX · PDBe 6DIX
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