Research workbench
Mec-8 C-terminal rrm domain bound to agcaca
Analyse Mec-8 C-terminal rrm domain bound to agcaca in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6DG0
- Type
- protein + DNA
- Length
- 180 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Mec-8 protein; DNA (5'-D(*AP*GP*CP*AP*CP*A)-3')
- UniProt
- Q22039
Structure
x-ray diffraction · 3 distinct chains · 23% helix, 32% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Mec-8 protein | protein | 84 | 23% helix, 32% strand | Q22039 |
| B | Mec-8 protein | protein | 84 | 23% helix, 32% strand | Q22039 |
| C, D | DNA (5'-D(*AP*GP*CP*AP*CP*A)-3') | dna | 6 | — | — |
Interfaces
3 interfaces between chains.
- A–D · 618 Ų buried · 21 hydrogen bonds · protein-nucleic
- B–C · 602 Ų buried · 16 hydrogen bonds · protein-nucleic
- A–B · 268 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 6DG0 · MEC-8 C-terminal RRM domain bound to AGCACA · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q22039
- Elsewhere: RCSB PDB 6DG0 · PDBe 6DG0 · UniProt Q22039
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