Research workbench
Crystal structure of a tripartite toxin component VCA0883 from vibrio cholerae
Analyse Crystal structure of a tripartite toxin component VCA0883 from vibrio cholerae in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6DFP
- Type
- protein
- Length
- 361 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- VCA0883
- UniProt
- Q9KL64
- Pockets
- 3 · best druggability 0.57
Structure
x-ray diffraction · 1 distinct chain · 71% helix, 8% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | VCA0883 | protein | 361 | 71% helix, 8% strand | Q9KL64 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 112 | 0.57 | 0.84 | 18 | empty |
| 2 | 56 | 0.42 | 0.82 | 15 | empty |
| 3 | 85 | 0.37 | 0.76 | 16 | empty |
Modifications
Observed in the structure: 8 modified (engineered).
Compared structures
- 6DFP · Crystal Structure of a Tripartite Toxin Component VCA0883 from Vibrio cholerae · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9KL64
- Elsewhere: RCSB PDB 6DFP · PDBe 6DFP · UniProt Q9KL64
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