Research workbench
E. COLI pria helicase winged helix domain deletion protein
Analyse E. COLI pria helicase winged helix domain deletion protein in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6DCR
- Type
- protein
- Length
- 1,239 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Primosomal protein N'
- EC
- 3.6.4.-
- UniProt
- P17888
- Ligands
- ZN, SO4
- Pockets
- 18 · best druggability 0.79
Structure
x-ray diffraction · 2 distinct chains · 32% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Primosomal protein N' (EC 3.6.4.-) | protein | 639 | 31% helix, 25% strand | P17888 |
| B | Primosomal protein N' (EC 3.6.4.-) | protein | 600 | 33% helix, 22% strand | P17888 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
18 pockets found on a 1 Å grid, 13 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 762 | 0.79 | 0.83 | 89 | empty |
| 2 | 867 | 0.77 | 0.81 | 87 | SO4 |
| 3 | 582 | 0.73 | 0.81 | 73 | empty |
| 4 | 372 | 0.73 | 0.84 | 42 | empty |
| 5 | 782 | 0.71 | 0.77 | 83 | SO4 |
Interfaces
1 interface between chains.
- A–B · 343 Ų buried · 6 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P17888
- Elsewhere: RCSB PDB 6DCR · PDBe 6DCR · UniProt P17888
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