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Crystal structure of vhh R303 in complex with inlb-lrr

Analyse Crystal structure of vhh R303 in complex with inlb-lrr in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6DBF
Type: protein
Length: 329 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Listeria virulence factor inlb; Inlb specific vhh R303
UniProt: Q45GD4
Pockets: 1 · best druggability 0.45

Structure

x-ray diffraction · 2 distinct chains · 17% helix, 28% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Listeria virulence factor inlb	protein	208	21% helix, 13% strand	Q45GD4
B	Inlb specific vhh R303	protein	121	11% helix, 53% strand	—

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	144	0.45	0.76	23	empty

Interfaces

1 interface between chains.

A–B · 730 Å² buried · 12 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 2 disulfide (disulfide).

Compared structures

6DBF · Crystal Structure of VHH R303 in complex with InlB-LRR · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q45GD4
Elsewhere: RCSB PDB 6DBF · PDBe 6DBF · UniProt Q45GD4

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