Research workbench
Nahe wt selenomethionine
Analyse Nahe wt selenomethionine in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6DAO
- Type
- protein
- Length
- 650 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Trans-O-hydroxybenzylidenepyruvate hydratase-aldolase
- EC
- 4.1.2.45
- UniProt
- Q51947
- Pockets
- 4 · best druggability 0.77
Structure
x-ray diffraction · 2 distinct chains · 50% helix, 12% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B | Trans-O-hydroxybenzylidenepyruvate hydratase-aldolase (EC 4.1.2.45) | protein | 324 | 50% helix, 12% strand | Q51947 |
| A | Trans-O-hydroxybenzylidenepyruvate hydratase-aldolase (EC 4.1.2.45) | protein | 326 | 50% helix, 12% strand | Q51947 |
Pockets
4 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1156 | 0.77 | 0.79 | 85 | empty |
| 2 | 195 | 0.55 | 0.79 | 27 | empty |
| 3 | 208 | 0.54 | 0.78 | 28 | empty |
| 4 | 72 | 0.32 | 0.74 | 14 | empty |
Interfaces
1 interface between chains.
- B–A · 808 Ų buried · 8 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 22 modified (engineered).
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q51947
- Elsewhere: RCSB PDB 6DAO · PDBe 6DAO · UniProt Q51947
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.