Research workbench
Campylobacter jejuni ferric uptake regulator S1 metalated
Analyse Campylobacter jejuni ferric uptake regulator S1 metalated in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6D57
- Type
- protein
- Length
- 295 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ferric uptake regulation protein
- UniProt
- A0A1E7PHN7
- Ligands
- ZN
- Pockets
- 1 · best druggability 0.73
Structure
x-ray diffraction · 2 distinct chains · 45% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ferric uptake regulation protein | protein | 144 | 45% helix, 21% strand | A0A1E7PHN7 |
| B | Ferric uptake regulation protein | protein | 151 | 44% helix, 19% strand | A0A1E7PHN7 |
Ligands and binding sites
- ZN · Zinc ion · metal · 2 copies · chains A, B
- FMT · Formic acid · additive · 8 copies · chains A, B
- GOL · Glycerol · additive · 3 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 879 | 0.73 | 0.77 | 75 | FMT, GOL |
Interfaces
1 interface between chains.
- A–B · 2446 Ų buried · 39 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 2 modified (nonstandard).
Compared structures
- 6D57 · Campylobacter jejuni ferric uptake regulator S1 metalated · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A1E7PHN7
- Elsewhere: RCSB PDB 6D57 · PDBe 6D57 · UniProt A0A1E7PHN7
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