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Crystal structure of an exoribonuclease-resistant RNA from sweet clover necrotic mosaic virus (scnmv)

Analyse Crystal structure of an exoribonuclease-resistant RNA from sweet clover… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6D3P
Type: RNA
Length: 45 nucleotides
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: RNA (45-mer)
Ligands: IRI
Pockets: 1 · best druggability 0.58

Structure

x-ray diffraction · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	RNA (45-mer)	rna	45	—	—

Ligands and binding sites

IRI · Iridium hexammine ion · ligand · 10 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	449	0.58	0.75	23	IRI

Compared structures

6D3P · Crystal structure of an exoribonuclease-resistant RNA from Sweet clover necrotic mosaic… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 6D3P · PDBe 6D3P

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