Research workbench
Crystal structure of spaa-slh
Analyse Crystal structure of spaa-slh in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6CWC
- Type
- protein
- Length
- 329 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Surface (S-) layer glycoprotein
- UniProt
- C1JZ07
- Ligands
- SO4, CL
- Pockets
- 1 · best druggability 0.73
Structure
x-ray diffraction · 2 distinct chains · 42% helix, 4% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Surface (S-) layer glycoprotein | protein | 164 | 41% helix, 4% strand | C1JZ07 |
| B | Surface (S-) layer glycoprotein | protein | 165 | 42% helix, 5% strand | C1JZ07 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 827 | 0.73 | 0.78 | 83 | CL, SO4 |
Interfaces
1 interface between chains.
- A–B · 483 Ų buried · 4 hydrogen bonds · protein-protein
Compared structures
- 6CWC · Crystal structure of SpaA-SLH · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt C1JZ07
- Elsewhere: RCSB PDB 6CWC · PDBe 6CWC · UniProt C1JZ07
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