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Crystal structure of the C-terminal domain of neisserial heparin binding antigen (nhba)
Analyse Crystal structure of the C-terminal domain of neisserial heparin binding… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6CUJ
- Type
- protein
- Length
- 298 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- GNA2132
- UniProt
- Q9JPP1
- Pockets
- 4 · best druggability 0.51
Structure
x-ray diffraction · 2 distinct chains · 2% helix, 61% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | GNA2132 | protein | 152 | 2% helix, 61% strand | Q9JPP1 |
| B | GNA2132 | protein | 146 | 2% helix, 60% strand | Q9JPP1 |
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 70 | 0.51 | 0.85 | 19 | empty |
| 2 | 157 | 0.51 | 0.79 | 36 | empty |
| 3 | 60 | 0.49 | 0.86 | 17 | empty |
| 4 | 50 | 0.29 | 0.76 | 20 | empty |
Interfaces
1 interface between chains.
- A–B · 1075 Ų buried · 17 hydrogen bonds · protein-protein
Compared structures
- 6CUJ · Crystal structure of the C-terminal domain of neisserial heparin binding antigen (NHBA) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9JPP1
- Elsewhere: RCSB PDB 6CUJ · PDBe 6CUJ · UniProt Q9JPP1
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