Research workbench
Crystallization, structure determination and least-squares refinement to 1.75 ångströms resolution of the fatty-acid-binding protein isolated from manduca sexta L
Analyse Crystallization, structure determination and least-squares refinement to 1.75… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1MDC
- Type
- protein
- Length
- 131 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Insect fatty acid binding protein
- UniProt
- P31417
- Ligands
- ACE, PLM, SO4
- Pockets
- 1 · best druggability 0.83
Structure
x-ray diffraction · 1 distinct chain · 11% helix, 59% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Insect fatty acid binding protein | protein | 131 | 11% helix, 59% strand | P31417 |
Ligands and binding sites
- ACE · Acetyl group · ligand · chains A
- PLM · Palmitic acid · ligand · chains A
- SO4 · Sulfate ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 446 | 0.83 | 0.91 | 49 | SO4, PLM |
Modifications
Observed in the structure: 1 covalent (covalent ligand).
Compared structures
- 1MDC · Crystallization, structure determination and least-squares refinement to 1.75 ångströms… · the same entry in another collection · chain A against A, TM-score 1.00
- P31417 · AlphaFold monomer V2.0 prediction for fatty acid-binding protein 2 (P31417) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P31417
- Elsewhere: RCSB PDB 1MDC · PDBe 1MDC · UniProt P31417
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