Research workbench
Mouse norovirus model using the crystal structure of mnv P domain and the norwalkvirus shell domain
Analyse Mouse norovirus model using the crystal structure of mnv P domain and the… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6CRJ
- Type
- protein
- Length
- 1,543 residues
- Chains
- 3
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Norwalk virus, mnv-1 capsid protein chimera
- UniProt
- Q83884, Q2V8W4
- Pockets
- 20 · best druggability 0.85
Structure
electron microscopy · 2 distinct chains · 8% helix, 34% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B | Norwalk virus, mnv-1 capsid protein chimera | protein | 527 | 8% helix, 33% strand | Q83884, Q2V8W4 |
| A, C | Norwalk virus, mnv-1 capsid protein chimera | protein | 508 | 7% helix, 34% strand | Q83884, Q2V8W4 |
Pockets
20 pockets found on a 1 Å grid, 10 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 363 | 0.85 | 0.95 | 50 | empty |
| 2 | 73 | 0.73 | 0.97 | 25 | empty |
| 3 | 67 | 0.68 | 0.95 | 18 | empty |
| 4 | 162 | 0.62 | 0.85 | 31 | empty |
| 5 | 313 | 0.59 | 0.77 | 40 | empty |
Interfaces
3 interfaces between chains.
- B–A · 2663 Ų buried · 54 hydrogen bonds · protein-protein
- A–C · 1438 Ų buried · 27 hydrogen bonds · protein-protein
- B–C · 1172 Ų buried · 10 hydrogen bonds · protein-protein
Compared structures
- 6CRJ · Mouse norovirus model using the crystal structure of MNV P domain and the Norwalkvirus… · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q83884
- Every structure of UniProt Q2V8W4
- Elsewhere: RCSB PDB 6CRJ · PDBe 6CRJ · UniProt Q83884 · UniProt Q2V8W4
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