Research workbench
Structure of apo GRMZM2G135359 pseudokinase
Analyse Structure of apo GRMZM2G135359 pseudokinase in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6CPY
- Type
- protein
- Length
- 539 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- GRMZM2G135359 pseudokinase
- UniProt
- B4F901
- Pockets
- 5 · best druggability 0.52
Structure
x-ray diffraction · 2 distinct chains · 44% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | GRMZM2G135359 pseudokinase | protein | 277 | 45% helix, 15% strand | B4F901 |
| B | GRMZM2G135359 pseudokinase | protein | 262 | 42% helix, 15% strand | B4F901 |
Pockets
5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 226 | 0.52 | 0.76 | 27 | empty |
| 2 | 172 | 0.48 | 0.76 | 23 | empty |
| 3 | 78 | 0.38 | 0.77 | 19 | empty |
| 4 | 55 | 0.34 | 0.78 | 13 | empty |
| 5 | 57 | 0.30 | 0.75 | 13 | empty |
Interfaces
1 interface between chains.
- A–B · 217 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 6CPY · Structure of apo GRMZM2G135359 pseudokinase · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B4F901
- Elsewhere: RCSB PDB 6CPY · PDBe 6CPY · UniProt B4F901
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