Research workbench

Selenomethionine variant (V29SEM) of protein GB1

Analyse Selenomethionine variant (V29SEM) of protein GB1 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6CNE
Type: protein
Length: 112 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Immunoglobulin G-binding protein G
UniProt: P06654
Ligands: PO4

Structure

x-ray diffraction · 1 distinct chain · 25% helix, 43% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Immunoglobulin G-binding protein G	protein	56	25% helix, 43% strand	P06654

Ligands and binding sites

PO4 · Phosphate ion · ion · 2 copies · chains A, B
MPD · (4S)-2-methyl-2,4-pentanediol · additive · 4 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

1 interface between chains.

A–B · 59 Å² buried · 0 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 2 modified (engineered).

Compared structures

6CNE · Selenomethionine variant (V29SeM) of protein GB1 · the same entry in another collection · chain A against A, TM-score 1.00
P06654 · AlphaFold monomer V2.0 prediction for immunoglobulin G-binding protein G (P06654) · a predicted model of the same protein · chain A against A, TM-score 0.97

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P06654
Elsewhere: RCSB PDB 6CNE · PDBe 6CNE · UniProt P06654

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