Research workbench
Human teneurin 2 extra-cellular region
Analyse Human teneurin 2 extra-cellular region in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6CMX
- Type
- protein
- Length
- 1,300 residues
- Chains
- 1
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Teneurin-2
- Ligands
- NAG, MAN
- Pockets
- 15 · best druggability 0.88
Structure
electron microscopy · 1 distinct chain · 7% helix, 36% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Teneurin-2 | protein | 1300 | 7% helix, 36% strand | — |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 11 copies · chains A
- MAN · alpha-D-mannopyranose · sugar · 6 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
15 pockets found on a 1 Å grid, 10 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1152 | 0.88 | 0.89 | 128 | empty |
| 2 | 662 | 0.80 | 0.85 | 91 | empty |
| 3 | 333 | 0.73 | 0.85 | 45 | empty |
| 4 | 614 | 0.73 | 0.80 | 51 | empty |
| 5 | 150 | 0.73 | 0.91 | 29 | empty |
Modifications
Observed in the structure: 5 glycan (N-glycosylation, glycosylation).
Compared structures
- 6CMX · Human Teneurin 2 extra-cellular region · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6CMX · PDBe 6CMX
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