Research workbench
Structure of HDAC6 zinc-finger ubiquitin binding domain soaked with 3, 3'-(BENZO[1,2-D:5,4-D']BIS(THIAZOLE)-2,6-DIYL)DIPROPIONIC acid
Analyse Structure of HDAC6 zinc-finger ubiquitin binding domain soaked with 3… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6CE6
- Type
- protein
- Length
- 101 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Histone deacetylase 6
- EC
- 3.5.1.98
- UniProt
- Q9UBN7
- Ligands
- EYP, ZN, UNX
Structure
x-ray diffraction · 1 distinct chain · 27% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Histone deacetylase 6 (EC 3.5.1.98) | protein | 101 | 27% helix, 18% strand | Q9UBN7 |
Ligands and binding sites
- EYP · 3,3'-(benzo[1,2-D:5,4-d']bis[1,3]thiazole-2,6-diyl) dipropanoic acid · ligand · chains A
- ZN · Zinc ion · metal · 3 copies · chains A
- UNX · Unknown atom or ion · ion · 3 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6CE6 · Structure of HDAC6 zinc-finger ubiquitin binding domain soaked with… · the same entry in another collection · chain A against A, TM-score 1.00
- Q9UBN7 · AlphaFold monomer V2.0 prediction for histone deacetylase 6 (Q9UBN7) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9UBN7
- Elsewhere: RCSB PDB 6CE6 · PDBe 6CE6 · UniProt Q9UBN7
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