Research workbench
Cross-alpha amyloid-like structure alphaaml
Analyse Cross-alpha amyloid-like structure alphaaml in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6C51
- Type
- protein
- Length
- 99 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cross-alpha amyloid-like structure alphaaml
- Ligands
- ACE, PO4, NH2
Structure
x-ray diffraction · 2 distinct chains · 90% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C, B | Cross-alpha amyloid-like structure alphaaml | protein | 25 | 88% helix, 0% strand | — |
| D | Cross-alpha amyloid-like structure alphaaml | protein | 24 | 92% helix, 0% strand | — |
Ligands and binding sites
- ACE · Acetyl group · ligand · 4 copies · chains A, C, B, D
- PO4 · Phosphate ion · ion · 6 copies · chains A, C, B, D
- NH2 · Amino group · ion · 3 copies · chains A, C, B, D
- MPD · (4S)-2-methyl-2,4-pentanediol · additive · chains D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
6 interfaces between chains.
- A–B · 529 Ų buried · 0 hydrogen bonds · protein-protein
- C–D · 513 Ų buried · 0 hydrogen bonds · protein-protein
- A–C · 381 Ų buried · 2 hydrogen bonds · protein-protein
- B–D · 179 Ų buried · 0 hydrogen bonds · protein-protein
- C–B · 71 Ų buried · 0 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 4 covalent (covalent ligand).
Compared structures
- 6C51 · Cross-alpha Amyloid-like Structure alphaAmL · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6C51 · PDBe 6C51
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.