Research workbench
Cricket paralysis virus rnai suppressor protein crpv-1A
Analyse Cricket paralysis virus rnai suppressor protein crpv-1A in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6C3R
- Type
- protein
- Length
- 282 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cricket paralysis virus 1A protein
- EC
- 3.4.22.-, 2.7.7.48
- UniProt
- Q9IJX4
- Pockets
- 3 · best druggability 0.63
Structure
x-ray diffraction · 1 distinct chain · 48% helix, 11% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Cricket paralysis virus 1A protein (EC 3.4.22.-, 2.7.7.48) | protein | 141 | 48% helix, 11% strand | Q9IJX4 |
Pockets
3 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 139 | 0.63 | 0.86 | 27 | empty |
| 2 | 423 | 0.62 | 0.76 | 38 | empty |
| 3 | 102 | 0.52 | 0.83 | 22 | empty |
Interfaces
1 interface between chains.
- A–B · 1353 Ų buried · 16 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 5 disulfide (disulfide).
Compared structures
- 6C3R · Cricket paralysis virus RNAi suppressor protein CrPV-1A · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9IJX4
- Elsewhere: RCSB PDB 6C3R · PDBe 6C3R · UniProt Q9IJX4
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.