Research workbench
Mycobacterium smegmatis rimj (apo form)
Analyse Mycobacterium smegmatis rimj (apo form) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6C30
- Type
- protein
- Length
- 426 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Gnat family acetyltransferase
- EC
- 2.3.1.-
- UniProt
- A0A0D6IYM9
- Ligands
- CL
- Pockets
- 1 · best druggability 0.84
Structure
x-ray diffraction · 1 distinct chain · 39% helix, 31% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Gnat family acetyltransferase (EC 2.3.1.-) | protein | 213 | 39% helix, 31% strand | A0A0D6IYM9 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1013 | 0.84 | 0.85 | 120 | CL, GOL |
Interfaces
1 interface between chains.
- A–B · 1070 Ų buried · 15 hydrogen bonds · protein-protein
Compared structures
- 6C30 · Mycobacterium smegmatis RimJ (apo form) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0D6IYM9
- Elsewhere: RCSB PDB 6C30 · PDBe 6C30 · UniProt A0A0D6IYM9
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