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Crystal structure of the N-terminal periplasmic domain of scsb from proteus mirabilis

Analyse Crystal structure of the N-terminal periplasmic domain of scsb from proteus… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6C29
Type: protein
Length: 741 residues
Chains: 3
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Putative metal resistance protein
UniProt: B4EV20
Pockets: 6 · best druggability 0.78

Structure

x-ray diffraction · 1 distinct chain · 5% helix, 53% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B, C	Putative metal resistance protein	protein	247	5% helix, 53% strand	B4EV20

Pockets

6 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	999	0.78	0.80	95	empty
2	147	0.48	0.78	22	empty
3	72	0.42	0.80	18	empty
4	89	0.41	0.78	19	empty
5	111	0.39	0.75	28	empty

Interfaces

2 interfaces between chains.

A–B · 709 Å² buried · 13 hydrogen bonds · protein-protein
B–C · 588 Å² buried · 6 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 12 modified (engineered).

Compared structures

6C29 · Crystal structure of the N-terminal periplasmic domain of ScsB from Proteus mirabilis · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt B4EV20
Elsewhere: RCSB PDB 6C29 · PDBe 6C29 · UniProt B4EV20

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