Research workbench
The crystal structure of fluoride channel fluc EC2 with monobody S9
Analyse The crystal structure of fluoride channel fluc EC2 with monobody S9 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6BX4
- Type
- protein
- Length
- 438 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Fluoride ion transporter crcb; Monobody
- UniProt
- Q6J5N4
- Ligands
- NA, F
- Pockets
- 3 · best druggability 0.50
Structure
x-ray diffraction · 2 distinct chains · 47% helix, 27% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Fluoride ion transporter crcb | protein | 123 | 85% helix, 0% strand | Q6J5N4 |
| C, D | Monobody | protein | 96 | 0% helix, 61% strand | — |
Ligands and binding sites
- NA · Sodium ion · metal · chains A, B
- F · Fluoride ion · ion · 4 copies · chains A, B
- DMU · Decyl-beta-D-maltopyranoside · additive · 2 copies · chains A, B, C, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 119 | 0.50 | 0.80 | 19 | empty |
| 2 | 108 | 0.50 | 0.81 | 20 | empty |
| 3 | 60 | 0.28 | 0.74 | 17 | empty |
Interfaces
5 interfaces between chains.
- A–B · 1705 Ų buried · 21 hydrogen bonds · protein-protein
- A–C · 557 Ų buried · 1 hydrogen bond · protein-protein
- B–D · 544 Ų buried · 2 hydrogen bonds · protein-protein
- B–C · 404 Ų buried · 1 hydrogen bond · protein-protein
- A–D · 393 Ų buried · 2 hydrogen bonds · protein-protein
Compared structures
- 6BX4 · The crystal structure of fluoride channel Fluc Ec2 with Monobody S9 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6J5N4
- Elsewhere: RCSB PDB 6BX4 · PDBe 6BX4 · UniProt Q6J5N4
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