Research workbench
Crystal structure of APOBEC3G catalytic domain complex with substrate ssdna
Analyse Crystal structure of APOBEC3G catalytic domain complex with substrate ssdna in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6BUX
- Type
- protein + DNA
- Length
- 199 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Apolipoprotein B mRNA editing enzyme catalytic subunit 3G catalytic domain; DNA…
- Ligands
- ZN
Structure
x-ray diffraction · 2 distinct chains · 37% helix, 27% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Apolipoprotein B mRNA editing enzyme catalytic subunit 3G catalytic domain | protein | 190 | 37% helix, 27% strand | — |
| B | DNA (5'-D(*AP*AP*TP*CP*CP*CP*AP*AP*A)-3') | dna | 9 | — | — |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 820 Ų buried · 23 hydrogen bonds · protein-nucleic
Compared structures
- 6BUX · Crystal structure of APOBEC3G catalytic domain complex with substrate ssdna · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6BUX · PDBe 6BUX
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