Research workbench
Crystal structure of a membrane protein, crystal form III
Analyse Crystal structure of a membrane protein, crystal form III in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6BUI
- Type
- protein
- Length
- 1,656 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Integral membrane protein
- UniProt
- Q5M4V4
- Pockets
- 20 · best druggability 0.77
Structure
x-ray diffraction · 1 distinct chain · 73% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| C, A, B, D | Integral membrane protein | protein | 414 | 73% helix, 0% strand | Q5M4V4 |
Pockets
20 pockets found on a 1 Å grid, 17 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1039 | 0.77 | 0.79 | 82 | empty |
| 2 | 976 | 0.75 | 0.77 | 67 | empty |
| 3 | 1047 | 0.75 | 0.77 | 80 | empty |
| 4 | 888 | 0.73 | 0.77 | 61 | empty |
| 5 | 409 | 0.63 | 0.77 | 32 | empty |
Interfaces
3 interfaces between chains.
- A–B · 1139 Ų buried · 8 hydrogen bonds · protein-protein
- C–A · 561 Ų buried · 0 hydrogen bonds · protein-protein
- B–D · 366 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 6BUI · Crystal structure of a membrane protein, crystal form III · the same entry in another collection · chain D against D, TM-score 1.00
- Q5M4V4 · AlphaFold monomer V2.0 prediction for teichoic acid D-alanyltransferase (Q5M4V4) · a predicted model of the same protein · chain C against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5M4V4
- Elsewhere: RCSB PDB 6BUI · PDBe 6BUI · UniProt Q5M4V4
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