Research workbench
Recombinant major vault protein [rattus norvegicus] structure in solution: conformation 1
Analyse Recombinant major vault protein [rattus norvegicus] structure in solution… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6BP8
- Type
- protein
- Length
- 782 residues
- Chains
- 1
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Major vault protein
- UniProt
- Q62667
- Pockets
- 4 · best druggability 0.49
Structure
electron microscopy · 1 distinct chain · 26% helix, 28% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Major vault protein | protein | 782 | 26% helix, 28% strand | Q62667 |
Pockets
4 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 123 | 0.49 | 0.80 | 22 | empty |
| 2 | 94 | 0.48 | 0.81 | 24 | empty |
| 3 | 137 | 0.45 | 0.77 | 20 | empty |
| 4 | 70 | 0.37 | 0.78 | 16 | empty |
Compared structures
- 6BP8 · Recombinant major vault protein [Rattus norvegicus] structure in solution: conformation 1 · the same entry in another collection · chain A against A, TM-score 1.00
- Q62667 · AlphaFold monomer V2.0 prediction for major vault protein (Q62667) · a predicted model of the same protein · chain A against A, TM-score 0.76
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q62667
- Elsewhere: RCSB PDB 6BP8 · PDBe 6BP8 · UniProt Q62667
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