Research workbench

Recombinant major vault protein [rattus norvegicus] structure in solution: conformation 2

Analyse Recombinant major vault protein [rattus norvegicus] structure in solution… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6BP7
Type: protein
Length: 772 residues
Chains: 1
Method: electron microscopy
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Major vault protein
UniProt: Q62667
Pockets: 5 · best druggability 0.60

Structure

electron microscopy · 1 distinct chain · 27% helix, 25% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Major vault protein	protein	772	27% helix, 25% strand	Q62667

Pockets

5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	178	0.60	0.82	31	empty
2	158	0.49	0.78	23	empty
3	137	0.43	0.76	26	empty
4	96	0.42	0.78	17	empty
5	69	0.36	0.77	16	empty

Compared structures

6BP7 · Recombinant major vault protein [Rattus norvegicus] structure in solution: conformation 2 · the same entry in another collection · chain A against A, TM-score 1.00
Q62667 · AlphaFold monomer V2.0 prediction for major vault protein (Q62667) · a predicted model of the same protein · chain A against A, TM-score 0.72

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q62667
Elsewhere: RCSB PDB 6BP7 · PDBe 6BP7 · UniProt Q62667

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.