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Crystal structure of TCR-MHC-like molecule

Analyse Crystal structure of TCR-MHC-like molecule in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6BNL
Type: protein
Length: 1,589 residues
Chains: 8
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: A0A0R4J090, P01887
Ligands: QWV, NAG

Structure

x-ray diffraction · 7 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	255	—	A0A0R4J090
B	—	protein	96	—	P01887
C	—	protein	202	—	—
D, H	—	protein	240	—	—
E	—	protein	260	—	A0A0R4J090
F	—	protein	93	—	P01887
G	—	protein	203	—	—

Ligands and binding sites

QWV · N-[(2S,3R)-3-hydroxy-1-{[6-O-(3-phenylpropanoyl)-alpha-D-galactopyranosyl]oxy}octadecan-2-yl]hexacosanamide · ligand · 2 copies · chains A, C, E, G
NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 8 copies · chains A, E

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6BNL · Crystal structure of TCR-MHC-like molecule · the same entry in another collection · chain G against G, TM-score 1.00
P01887 · AlphaFold monomer V2.0 prediction for beta-2-microglobulin (P01887) · a predicted model of the same protein · chain B against A, TM-score 0.97

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A0R4J090
Every structure of UniProt P01887
Elsewhere: RCSB PDB 6BNL · PDBe 6BNL · UniProt A0A0R4J090 · UniProt P01887

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