Research workbench
1.83 ångström resolution crystal structure of N-terminal fragment (residues 1-404) of elongation factor G from enterococcus faecalis
Analyse 1.83 ångström resolution crystal structure of N-terminal fragment (residues… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6BK7
- Type
- protein
- Length
- 760 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Elongation factor G
- UniProt
- Q839G9
- Ligands
- NA
- Pockets
- 12 · best druggability 0.71
Structure
x-ray diffraction · 1 distinct chain · 27% helix, 32% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Elongation factor G | protein | 380 | 27% helix, 32% strand | Q839G9 |
Ligands and binding sites
- NA · Sodium ion · metal · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
12 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 70 | 0.71 | 0.96 | 23 | empty |
| 2 | 74 | 0.71 | 0.96 | 27 | empty |
| 3 | 208 | 0.64 | 0.84 | 28 | NA |
| 4 | 184 | 0.63 | 0.84 | 28 | NA |
| 5 | 98 | 0.50 | 0.82 | 24 | empty |
Compared structures
- 6BK7 · 1.83 Angstrom Resolution Crystal Structure of N-terminal Fragment (residues 1-404) of… · the same entry in another collection · chain A against A, TM-score 1.00
- Q839G9 · AlphaFold monomer V2.0 prediction for elongation factor G (Q839G9) · a predicted model of the same protein · chain B against A, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q839G9
- Elsewhere: RCSB PDB 6BK7 · PDBe 6BK7 · UniProt Q839G9
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