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Crystal structure of the hr-1 domain of drosophila caprin in the P212121 space group

Analyse Crystal structure of the hr-1 domain of drosophila caprin in the P212121 space… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6BK4
Type: protein
Length: 201 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Caprin homolog
UniProt: Q9I7D3
Pockets: 1 · best druggability 0.57

Structure

x-ray diffraction · 2 distinct chains · 72% helix, 2% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Caprin homolog	protein	106	68% helix, 4% strand	Q9I7D3
B	Caprin homolog	protein	95	77% helix, 0% strand	Q9I7D3

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	183	0.57	0.81	21	empty

Interfaces

1 interface between chains.

A–B · 1409 Å² buried · 24 hydrogen bonds · protein-protein

Compared structures

6BK4 · Crystal structure of the HR-1 domain of Drosophila caprin in the P212121 space group · the same entry in another collection · chain A against A, TM-score 1.00
Q9I7D3 · AlphaFold monomer V2.0 prediction for caprin homolog (Q9I7D3) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9I7D3
Elsewhere: RCSB PDB 6BK4 · PDBe 6BK4 · UniProt Q9I7D3

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