Research workbench
Structure of NLPC1 from trichomonas vaginalis
Analyse Structure of NLPC1 from trichomonas vaginalis in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6BIM
- Type
- protein
- Length
- 278 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Clan ca, family C40, NLPC/P60 superfamily cysteine peptidase
- UniProt
- A2D7D7
- Pockets
- 4 · best druggability 0.44
Structure
x-ray diffraction · 1 distinct chain · 12% helix, 40% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Clan ca, family C40, NLPC/P60 superfamily cysteine peptidase | protein | 278 | 12% helix, 40% strand | A2D7D7 |
Pockets
4 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 97 | 0.44 | 0.78 | 19 | empty |
| 2 | 77 | 0.32 | 0.74 | 23 | empty |
| 3 | 59 | 0.31 | 0.76 | 13 | empty |
| 4 | 57 | 0.24 | 0.72 | 18 | empty |
Modifications
Observed in the structure: 6 modified (engineered).
Compared structures
- 6BIM · Structure of NlpC1 from Trichomonas vaginalis · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A2D7D7
- Elsewhere: RCSB PDB 6BIM · PDBe 6BIM · UniProt A2D7D7
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