Research workbench
Crystal structure of the chlamydomonas reinhardtii LCI1 channel
Analyse Crystal structure of the chlamydomonas reinhardtii LCI1 channel in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6BHP
- Type
- protein
- Length
- 510 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Membrane protein
- UniProt
- Q39583
- Ligands
- HG, CO2
- Pockets
- 9 · best druggability 0.73
Structure
x-ray diffraction · 1 distinct chain · 81% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C | Membrane protein | protein | 170 | 81% helix, 0% strand | Q39583 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
9 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 98 | 0.73 | 0.94 | 27 | empty |
| 2 | 275 | 0.66 | 0.82 | 32 | empty |
| 3 | 76 | 0.62 | 0.89 | 16 | empty |
| 4 | 237 | 0.52 | 0.76 | 29 | empty |
| 5 | 181 | 0.51 | 0.77 | 20 | empty |
Interfaces
3 interfaces between chains.
- B–C · 1146 Ų buried · 15 hydrogen bonds · protein-protein
- A–B · 1130 Ų buried · 9 hydrogen bonds · protein-protein
- A–C · 989 Ų buried · 10 hydrogen bonds · protein-protein
Compared structures
- 6BHP · Crystal structure of the Chlamydomonas reinhardtii LCI1 channel · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q39583
- Elsewhere: RCSB PDB 6BHP · PDBe 6BHP · UniProt Q39583
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