Research workbench

Red light-absorbing state of NPR6012G4, a RED/GREEN cyanobacteriochrome

Analyse Red light-absorbing state of NPR6012G4, a RED/GREEN cyanobacteriochrome in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6BHN
Type: protein
Length: 156 residues
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Methyl-accepting chemotaxis sensory transducer with phytochrome sensor
UniProt: B2IU14
Ligands: CYC
Pockets: 2 · best druggability 0.70

Structure

solution nmr · 1 distinct chain · 35% helix, 22% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Methyl-accepting chemotaxis sensory transducer with phytochrome sensor	protein	156	35% helix, 22% strand	B2IU14

Ligands and binding sites

CYC · Phycocyanobilin · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	198	0.70	0.87	23	CYC
2	91	0.39	0.77	14	empty

Modifications

Observed in the structure: 1 cofactor (phycocyanobilin attachment).

Compared structures

6BHN · Red Light-Absorbing State of NpR6012g4, a Red/Green Cyanobacteriochrome · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt B2IU14
Elsewhere: RCSB PDB 6BHN · PDBe 6BHN · UniProt B2IU14

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