Research workbench
Crystal structure of legionella effector protein sdea (LPG2157) aa. 211-910
Analyse Crystal structure of legionella effector protein sdea (LPG2157) aa. 211-910 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6B7Q
- Type
- protein
- Length
- 667 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Sdea
- UniProt
- Q6RCR0
- Ligands
- HG
- Pockets
- 9 · best druggability 0.71
Structure
x-ray diffraction · 1 distinct chain · 49% helix, 13% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Sdea | protein | 667 | 49% helix, 13% strand | Q6RCR0 |
Ligands and binding sites
- HG · Mercury (II) ion · metal · 10 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
9 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 378 | 0.71 | 0.83 | 48 | empty |
| 2 | 183 | 0.47 | 0.76 | 28 | HG |
| 3 | 96 | 0.34 | 0.73 | 21 | empty |
| 4 | 57 | 0.31 | 0.76 | 14 | empty |
| 5 | 63 | 0.31 | 0.75 | 14 | empty |
Compared structures
- 6B7Q · Crystal structure of Legionella effector protein sdeA (lpg2157) aa. 211-910 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6RCR0
- Elsewhere: RCSB PDB 6B7Q · PDBe 6B7Q · UniProt Q6RCR0
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