Research workbench
Asparaginyl endopeptidase 1 bound to aan peptide, a tetrahedral intermediate
Analyse Asparaginyl endopeptidase 1 bound to aan peptide, a tetrahedral intermediate in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6AZT
- Type
- protein
- Length
- 276 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Asparaginyl endopeptidase 1; Ala-ala-asn tetrahedral intermediate
- UniProt
- A0A0G2RI59
- Ligands
- SNN
Structure
x-ray diffraction · 2 distinct chains · 32% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Asparaginyl endopeptidase 1 | protein | 273 | 32% helix, 16% strand | A0A0G2RI59 |
| B | Ala-ala-asn tetrahedral intermediate | protein | 3 | 0% helix, 33% strand | — |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 264 Ų buried · 12 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 2 covalent, 1 disulfide, 1 modified (covalent ligand, disulfide, nonstandard).
Compared structures
- 6AZT · Asparaginyl endopeptidase 1 bound to AAN peptide, a tetrahedral intermediate · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0G2RI59
- Elsewhere: RCSB PDB 6AZT · PDBe 6AZT · UniProt A0A0G2RI59
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