Research workbench
1.75 ångström resolution crystal structure of D-alanyl-D-alanine endopeptidase from enterobacter cloacae in complex with covalently bound boronic acid
Analyse 1.75 ångström resolution crystal structure of D-alanyl-D-alanine endopeptidase… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6AZI
- Type
- protein
- Length
- 252 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- D-alanyl-D-alanine endopeptidase
- EC
- 3.4.16.4
- UniProt
- A0A0H3CN11
- Pockets
- 2 · best druggability 0.31
Structure
x-ray diffraction · 1 distinct chain · 35% helix, 26% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | D-alanyl-D-alanine endopeptidase (EC 3.4.16.4) | protein | 252 | 35% helix, 26% strand | A0A0H3CN11 |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 79 | 0.31 | 0.74 | 19 | empty |
| 2 | 55 | 0.28 | 0.74 | 13 | empty |
Modifications
Observed in the structure: 12 modified (engineered, nonstandard).
Compared structures
- 6AZI · 1.75 Angstrom Resolution Crystal Structure of D-alanyl-D-alanine Endopeptidase from… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0H3CN11
- Elsewhere: RCSB PDB 6AZI · PDBe 6AZI · UniProt A0A0H3CN11
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.